Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51231235_51238988_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

51231235 - 51238988

Intron Length:

7754

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

TATAAACTCATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATAAAC

U12 Branch Point Sequence:

GTTGTATAAACT

Flanking Amino Acid:

HTVTDVQENDKEDRLMLRDL

Intron Amino Acid Position:

313

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

84.3

27.2

Major BPS

64.6

0.36

71.3

30.4

Major PPT

0.29

55.2

39.7

Minor 5ss

47.2

-0.3

2.8

66.2

38.1

Minor BPS

49.6

0.05

73.22

43.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006495

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006751

51201436 - 51258543

57108