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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51239099_51239264_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51239099 - 51239264
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTAAT
5'SS Class:
major
3'SS Sequence:
TACTCACATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATAATTTAATT
Flanking Amino Acid:
LGIPRLLDPEDVNVDKPDEK
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
80
34.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
64.9
0.34
0.9
56.2
39
Minor 5ss
36.4
-1.5
3
51.3
45.2
Minor BPS
64.9
0.55
1.5
79
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006495
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006751
51201436 - 51258543
57108
ENSAPLT00000006745
51213390 - 51258543
45154
ENSAPLT00000040657
51224792 - 51259978
35187
ENSAPLT00000020606
51224792 - 51258543
33752