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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51239462_51241047_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51239462 - 51241047
Intron Length:
1586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCATATTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTCCTTCATA
Flanking Amino Acid:
LLKWIQYTAAKQVGIEIKDF
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
74.5
0.55
0.8
73.2
36.6
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
77
0.84
1.6
87.11
31.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006495
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006751
51201436 - 51258543
57108
ENSAPLT00000006745
51213390 - 51258543
45154
ENSAPLT00000040657
51224792 - 51259978
35187
ENSAPLT00000020606
51224792 - 51258543
33752