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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51241227_51242347_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51241227 - 51242347
Intron Length:
1121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAACAT
5'SS Class:
major
3'SS Sequence:
TTTTTTCACACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTATCTATAAAT
Flanking Amino Acid:
LVWTIILYFQIEELTSNLPQ
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
65.1
40.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.5
0.78
0.8
80.9
30.1
Minor 5ss
31.9
-2.1
3.5
47.5
47.9
Minor BPS
64.7
0.54
1.7
83.41
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006495
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006751
51201436 - 51258543
57108
ENSAPLT00000006745
51213390 - 51258543
45154
ENSAPLT00000040657
51224792 - 51259978
35187
ENSAPLT00000020606
51224792 - 51258543
33752