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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51242441_51242778_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51242441 - 51242778
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
CTTTCCTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
CTTTCCTAAATA
Flanking Amino Acid:
GRRSVYRGSPIKLVNINSTD
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.2
72.2
38.8
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
69.7
0.44
0.9
66.8
33.2
Minor 5ss
42.2
-0.9
2.5
53.2
43.6
Minor BPS
71
0.66
1.7
78.78
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006495
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040657
51224792 - 51259978
35187
ENSAPLT00000020606
51224792 - 51258543
33752
ENSAPLT00000006751
51201436 - 51258543
57108