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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51242441_51245403_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51242441 - 51245403
Intron Length:
2963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTTTG
5'SS Class:
major
3'SS Sequence:
CTTTCCTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
CTTTCCTAAATA
Flanking Amino Acid:
TALKFLEGRRIKLVNINSTD
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
69.7
43.7
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
69.7
0.44
0.9
66.8
33.2
Minor 5ss
42
-0.9
3.1
49
47.2
Minor BPS
71
0.66
1.7
78.78
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006495
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006745
51213390 - 51258543
45154