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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51245488_51247296_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51245488 - 51247296
Intron Length:
1809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATACATCTAATG
Flanking Amino Acid:
LLEVLSGQKLPCEQGRQLKR
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
78.7
0.64
1
83.1
32.3
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
45.2
-0.5
1.8
50.1
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006495
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040657
51224792 - 51259978
35187
ENSAPLT00000020606
51224792 - 51258543
33752
ENSAPLT00000006751
51201436 - 51258543
57108
ENSAPLT00000006745
51213390 - 51258543
45154