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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51256674_51258410_R

Intron Information:

Intron Rank:
2
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
51256674 - 51258410
Intron Length:
1737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTCTCCATA
5'SS Class:
weak_minor
3'SS Sequence:
TTTCTTTCCTCAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
AATATCTAAACT
Flanking Amino Acid:
GNFKLQRLSLNEQESVQKRT
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
44.7
-0.3
1.3
46.5
43.5
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
88.9
0.88
0.6
88.5
21
Minor 5ss
57.8
0.26
2.2
71.7
39.2
Minor BPS
60.6
0.41
1.7
76.08
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006495
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020606
51224792 - 51258543
33752
ENSAPLT00000006751
51201436 - 51258543
57108
ENSAPLT00000006745
51213390 - 51258543
45154