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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51258422_51258460_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
51258422 - 51258460
Intron Length:
39

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGAAGG
5'SS Class:
major
3'SS Sequence:
ATCCTGTGCAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CAGGACTGAACT
Flanking Amino Acid:
SGFLGNFKLQRLSLNEQESV
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
0.9
64.2
41.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
47.7
-0.1
1.7
52.4
41.1
Minor 5ss
33.5
-1.9
2.8
39.9
45.7
Minor BPS
48.7
-0
1.8
62.99
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006495
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006751
51201436 - 51258543
57108
ENSAPLT00000006745
51213390 - 51258543
45154
ENSAPLT00000020606
51224792 - 51258543
33752