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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51329539_51352425_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51329539 - 51352425
Intron Length:
22887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
AATGAATTAACT
Flanking Amino Acid:
SLTTWPPKFWEQITIAFTVS
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
78.8
38.3
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
77.2
0.61
0.9
73.7
40.6
Minor 5ss
49.3
-0
2.8
65.3
45.9
Minor BPS
54.7
0.23
1.9
74.29
41.7

Associated Gene:

Gene:
MYCT1
Ensembl Gene ID:
ENSAPLG00000020316
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026216
51329293 - 51353468
24176