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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51371765_51373368_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51371765 - 51373368
Intron Length:
1604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TCTTCTCCAACA
Flanking Amino Acid:
PRGAAFPAVPRLGNRMPFDA
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
70.8
39.4
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
78.1
0.63
0.8
73.9
29.7
Minor 5ss
34
-1.8
3.1
45.4
42.5
Minor BPS
56.7
0.21
1.9
72.2
40

Associated Gene:

Gene:
VIP
Ensembl Gene ID:
ENSAPLG00000006708
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006972
51371643 - 51377922
6280