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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51373510_51373889_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51373510 - 51373889
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTATTTATTG
Flanking Amino Acid:
FYFDLSRIIDRNARHADGIF
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.02
0.7
87.4
21.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.3
0.7
0.9
78.4
34.7
Minor 5ss
39.3
-1.2
2.9
52
45.2
Minor BPS
51.6
-0
1.8
60.8
41.5

Associated Gene:

Gene:
VIP
Ensembl Gene ID:
ENSAPLG00000006708
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006972
51371643 - 51377922
6280