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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51373995_51375347_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51373995 - 51375347
Intron Length:
1353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TGTATGTTGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTCCTTCACG
Flanking Amino Acid:
YLHSLIRKRVSSQDSPVKRH
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
68.9
0.43
1.1
61.6
48.5
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
77.4
0.72
1.8
83.33
37.2

Associated Gene:

Gene:
VIP
Ensembl Gene ID:
ENSAPLG00000006708
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006972
51371643 - 51377922
6280