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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51376262_51377741_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51376262 - 51377741
Intron Length:
1480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTCCA
5'SS Class:
major
3'SS Sequence:
CTTTGCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATTTTTCAAACA
Flanking Amino Acid:
VDELLSHLPLDL*
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
66
39.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
81.4
0.71
0.9
77.9
35.1
Minor 5ss
40.7
-1
2.7
47.8
43
Minor BPS
50.9
0.02
1.9
69.61
36.9

Associated Gene:

Gene:
VIP
Ensembl Gene ID:
ENSAPLG00000006708
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006972
51371643 - 51377922
6280