About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51411105_51412920_F

Intron Information:

Intron Rank:
138765
Intron Class:
major
Intron Phase:
Intron Coordinates:
51411105 - 51412920
Intron Length:
1816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
GGATTTTCAGGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
40.7
-0.7
1.8
44.48
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024760
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021113
51403543 - 51413903
10361