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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51413008_51413741_F

Intron Information:

Intron Rank:
138766
Intron Class:
major
Intron Phase:
Intron Coordinates:
51413008 - 51413741
Intron Length:
734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
ATCCCTGTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATCCCTGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
67
0.38
1
61.5
38.2
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
53.3
0.1
2
66.76
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024760
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021113
51403543 - 51413903
10361