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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51413008_51414608_F

Intron Information:

Intron Rank:
138768
Intron Class:
major
Intron Phase:
Intron Coordinates:
51413008 - 51414608
Intron Length:
1601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
76.9
0.61
0.9
76
37.6
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
79
0.99
1
87.98
30.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024760
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022754
51403543 - 51415249
11707