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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51478080_51488588_R

Intron Information:

Intron Rank:
131718
Intron Class:
major
Intron Phase:
Intron Coordinates:
51478080 - 51488588
Intron Length:
10509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTGTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTGCCTAATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
78.8
35.5
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
88.8
0.87
0.7
84.5
30.4
Minor 5ss
38.4
-1.3
2.7
46.6
34.4
Minor BPS
59.7
0.38
2.1
83.49
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018051
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042649
51476102 - 51490054
13953