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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51488698_51489939_R

Intron Information:

Intron Rank:
131719
Intron Class:
major
Intron Phase:
Intron Coordinates:
51488698 - 51489939
Intron Length:
1242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TATCTAATCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ACTGCTATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
77.6
31.4
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
74.3
0.55
0.9
71
38.3
Minor 5ss
41.6
-0.9
2.7
51
39.8
Minor BPS
49.6
0.05
1.8
68.24
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018051
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042649
51476102 - 51490054
13953