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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51502035_51503306_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51502035 - 51503306
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTCTCTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTCTCAAATT
Flanking Amino Acid:
MYSKAVKNLSDGTKTSEHAA
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
75.6
35.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.7
0.65
0.9
80.7
31.3
Minor 5ss
47.7
-0.2
2.8
71.6
38.3
Minor BPS
53.4
0.19
2
75.83
41.7

Associated Gene:

Gene:
FBXO5
Ensembl Gene ID:
ENSAPLG00000006998
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007258
51500240 - 51511653
11414