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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51503398_51503715_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51503398 - 51503715
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTCATTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTCATTACAG
Flanking Amino Acid:
LRHLSDMDLINFAKVSTMWK
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.8
0.63
0.9
70.3
39.5
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
49.5
-0.1
2.1
61.84
45.5

Associated Gene:

Gene:
FBXO5
Ensembl Gene ID:
ENSAPLG00000006998
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007258
51500240 - 51511653
11414