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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51504450_51508607_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51504450 - 51508607
Intron Length:
4158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCATT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCACTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATTTCCTTACTG
Flanking Amino Acid:
MLIHHSQKDTNKAMKSNI
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
82
38.1
Major BPS
80
0.75
1
78.6
31
Major PPT
76.8
0.6
0.9
70
35.4
Minor 5ss
44.2
-0.6
3.2
66.1
45
Minor BPS
69.8
0.48
1.7
73.58
39.3

Associated Gene:

Gene:
FBXO5
Ensembl Gene ID:
ENSAPLG00000006998
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007258
51500240 - 51511653
11414