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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51509080_51509539_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
51509080 - 51509539
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTTTATAAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.1
0.68
0.8
75.8
32.8
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
59.7
0.38
1.9
81.55
39.8

Associated Gene:

Gene:
FBXO5
Ensembl Gene ID:
ENSAPLG00000006998
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007258
51500240 - 51511653
11414
Gene:
MTRF1L
Ensembl Gene ID:
ENSAPLG00000007043
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028256
51508443 - 51517808
9366
ENSAPLT00000007312
51508876 - 51522548
13673