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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51509677_51511535_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
51509677 - 51511535
Intron Length:
1859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTTCAC
5'SS Class:
major
3'SS Sequence:
ATATTTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTACAGTTAAGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
61.4
39.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
76.3
0.59
1
73.6
41
Minor 5ss
28.1
-2.5
2.9
35.3
41.2
Minor BPS
46.7
-0.1
2.4
71.43
44.8

Associated Gene:

Gene:
FBXO5
Ensembl Gene ID:
ENSAPLG00000006998
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007258
51500240 - 51511653
11414
Gene:
MTRF1L
Ensembl Gene ID:
ENSAPLG00000007043
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028256
51508443 - 51517808
9366
ENSAPLT00000007312
51508876 - 51522548
13673