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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51527017_51529549_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51527017 - 51529549
Intron Length:
2533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TCATCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TATTGTTTAATA
Flanking Amino Acid:
DYISILSPKEVSLDSRVREV
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.1
0.74
0.8
81
30.7
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
67.1
0.53
1.7
76.04
35.6

Associated Gene:

Gene:
RGS17
Ensembl Gene ID:
ENSAPLG00000007077
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007344
51526828 - 51556432
29605