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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51533635_51556288_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51533635 - 51556288
Intron Length:
22654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
TACTACATTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TTTCTCTAGACA
Flanking Amino Acid:
FCWCCCCSCSCLTVRNEDRG
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.8
40.4
Major BPS
62
0.3
1
62.3
30.4
Major PPT
74
0.54
0.9
66.7
38.6
Minor 5ss
43.1
-0.8
2.8
56.7
41.7
Minor BPS
61.5
0.36
1.7
75.39
35.8

Associated Gene:

Gene:
RGS17
Ensembl Gene ID:
ENSAPLG00000007077
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007344
51526828 - 51556432
29605