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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51920748_51924251_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51920748 - 51924251
Intron Length:
3504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
AACCACTTACTC
Flanking Amino Acid:
KIRMLNSTLKCKEHDLATIN
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.5
31.6
Major BPS
61.3
0.28
1
62
30.6
Major PPT
73.4
0.53
0.8
65.7
35.3
Minor 5ss
31.6
-2.1
3.2
38.8
46.5
Minor BPS
46.7
-0.2
1.7
52.4
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015652
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016324
51918034 - 51967194
49161