About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51938756_51941999_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51938756 - 51941999
Intron Length:
3244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTGCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTGCTCATTT
Flanking Amino Acid:
PQAPNGKNEEECYSESEHDD
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
84
28
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
69.4
0.44
1
66.2
40.2
Minor 5ss
53.1
0.1
2.3
69.7
41.2
Minor BPS
52.3
0.15
2.2
79.99
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015652
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016324
51918034 - 51967194
49161