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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51942062_51945289_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51942062 - 51945289
Intron Length:
3228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
GTTCTGAACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GTATCATTAACG
Flanking Amino Acid:
FAAENVLEMNTWLSKLGMAV
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
72.7
44.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
61
0.25
1
54.9
39.3
Minor 5ss
36.5
-1.5
2.7
41.8
38.1
Minor BPS
68.1
0.43
1.7
70.9
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015652
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016324
51918034 - 51967194
49161