Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51945362_51947863_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

51945362 - 51947863

Intron Length:

2502

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTAAGTTTA

5'SS Class:

major

3'SS Sequence:

TATTTTCTTAAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATTTTCTTAAAG

Flanking Amino Acid:

VDRATECKKKHAIKISHPQI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

78.2

32.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

78.3

0.64

79.1

32.9

Minor 5ss

-0.4

2.8

63.8

41.6

Minor BPS

73.4

0.6

1.4

74.89

36.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015652

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016324

51918034 - 51967194

49161