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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51947938_51956829_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51947938 - 51956829
Intron Length:
8892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTATTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTTATTTATTC
Flanking Amino Acid:
SSLYWYSSQLAEKAEGFIRL
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
83.7
0.76
0.8
78.4
34.4
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
56.7
0.19
1.7
69.43
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015652
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016324
51918034 - 51967194
49161