Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52006192_52008997_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

52006192 - 52008997

Intron Length:

2806

Sequence Information:

Terminal Dinucleotides:

GT-AA

5'SS Sequence:

CTG|GTCAGTTGG

5'SS Class:

major

3'SS Sequence:

TGTTTTGTTTCAA|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

TGTCAGCTAATA

Flanking Amino Acid:

KSSSAEPSLLRDIEAPYYQM

Intron Amino Acid Position:

568

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.3

0.5

1.3

62.4

44.7

Major BPS

70.8

0.52

70.6

31.6

Major PPT

46.6

-0.1

3.2

76.9

42.1

Minor 5ss

35.2

-1.7

2.7

38.3

41.7

Minor BPS

-0.5

2.3

59.63

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006234

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045402

52006135 - 52041301

35167

ENSAPLT00000030994

52006135 - 52058815

52681