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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52010809_52011260_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52010809 - 52011260
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTCTGCATAACC
Flanking Amino Acid:
TKMREKTQSYGKPRPLSMPA
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
79.4
0.66
0.8
78
30.9
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
59.4
0.27
2.1
75.35
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006234
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045402
52006135 - 52041301
35167
ENSAPLT00000030994
52006135 - 52058815
52681
ENSAPLT00000006481
52008959 - 52051332
42374