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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52015690_52016418_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52015690 - 52016418
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TATTCTCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
ATGTCATTATTC
Flanking Amino Acid:
EVIQVNRQTVVGWQLKNLVA
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
74.4
0.55
1
72.3
37.7
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
53.9
0.1
1.9
65.88
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006234
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045402
52006135 - 52041301
35167
ENSAPLT00000030994
52006135 - 52058815
52681
ENSAPLT00000006481
52008959 - 52051332
42374