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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52016488_52019258_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52016488 - 52019258
Intron Length:
2771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
GCCTGCTGAAGC
Flanking Amino Acid:
LHVITGTTENSPADRSQKIH
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
85.9
0.81
0.6
81.9
22.8
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
44.6
-0.4
2.1
51.35
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006234
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030994
52006135 - 52058815
52681
ENSAPLT00000006481
52008959 - 52051332
42374
ENSAPLT00000045402
52006135 - 52041301
35167