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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52021220_52023100_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52021220 - 52023100
Intron Length:
1881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
GTTCTCTTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AGTTTTTTAACT
Flanking Amino Acid:
ADMEDKVQTVSKALNGICDK
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76.2
32.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.4
0.62
0.8
72.5
32.3
Minor 5ss
37.9
-1.4
2.7
45.5
37.1
Minor BPS
78.6
0.97
1
86.63
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006234
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006481
52008959 - 52051332
42374
ENSAPLT00000045402
52006135 - 52041301
35167
ENSAPLT00000030994
52006135 - 52058815
52681