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Intron Name: Anas_platyrhynchos_platyrhynchos_3_52023143_52025686_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52023143 - 52025686

Intron Length:

2544

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

GTTTTGTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

TATTGGTTAACA

Flanking Amino Acid:

CLDLTTTVQKDCTVADMEDK

Intron Amino Acid Position:

172

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

1.2

38.1

Major BPS

88.7

0.96

0.8

36.5

Major PPT

87.1

0.84

0.8

84.6

Minor 5ss

-1.7

2.7

41.8

44.6

Minor BPS

57.3

0.22

2.4

76.39

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006234

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045402

52006135 - 52041301

35167

ENSAPLT00000030994

52006135 - 52058815

52681

ENSAPLT00000006481

52008959 - 52051332

42374