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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52025775_52027216_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52025775 - 52027216
Intron Length:
1442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAAGAA
U12 Branch Point Sequence:
TGTCCCTTCAGT
Flanking Amino Acid:
AAKALLAWLDRTPFTGIADF
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
48.4
-0.1
1.1
44.7
36.9
Major PPT
84.6
0.78
0.8
79.1
32.9
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
57.1
0.3
2.1
78.23
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006234
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045402
52006135 - 52041301
35167
ENSAPLT00000030994
52006135 - 52058815
52681
ENSAPLT00000006481
52008959 - 52051332
42374