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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52034272_52041204_R

Intron Information:

Intron Rank:
1
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
52034272 - 52041204
Intron Length:
6933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTCCTTT
5'SS Class:
weak_minor
3'SS Sequence:
TGTGCTTTGTTAG|G
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TTCACAC
U12 Branch Point Sequence:
CCCTTCACACTC
Flanking Amino Acid:
SCTGKDNVQSGLDDCLQQYV
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.8
0.14
1.4
62.3
44.7
Major BPS
67.8
0.44
1
75
30.1
Major PPT
69.7
0.44
1
69.7
41.5
Minor 5ss
73.9
0.8
1.9
82.7
36.5
Minor BPS
39.2
-0.8
1.8
41.95
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006234
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045402
52006135 - 52041301
35167