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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52034272_52051274_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52034272 - 52051274
Intron Length:
17003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTCAGTGTG
5'SS Class:
major
3'SS Sequence:
TGTGCTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAC
U12 Branch Point Sequence:
CCCTTCACACTC
Flanking Amino Acid:
REDSVFCVACGLDDCLQQYV
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.3
68.8
42.2
Major BPS
67.8
0.44
1
75
30.1
Major PPT
69.7
0.44
1
69.7
41.5
Minor 5ss
31.9
-2.1
3.2
38
41
Minor BPS
39.2
-0.8
1.8
41.95
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006234
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006481
52008959 - 52051332
42374