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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52088652_52090548_R

Intron Information:

Intron Rank:
144903
Intron Class:
major
Intron Phase:
Intron Coordinates:
52088652 - 52090548
Intron Length:
1897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
ACAACTTAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.5
33.5
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
90.9
0.92
0.6
84.7
30.2
Minor 5ss
41
-1
3
56.7
47.6
Minor BPS
47.8
-0
1.8
61.04
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025349
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035229
52087585 - 52090689
3105
ENSAPLT00000019292
52088251 - 52090689
2439