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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52144918_52145514_R

Intron Information:

Intron Rank:
143586
Intron Class:
major
Intron Phase:
Intron Coordinates:
52144918 - 52145514
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGAAGA
5'SS Class:
major
3'SS Sequence:
TTGCTTTATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
72.9
38.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
78
0.63
0.9
77.9
35.6
Minor 5ss
29.2
-2.4
2.6
32.8
41.5
Minor BPS
65.7
0.57
1.7
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024583
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032305
52141272 - 52146289
5018