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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52146705_52184149_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52146705 - 52184149
Intron Length:
37445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGCTTT
Flanking Amino Acid:
MGAKLYSLNDYKPP
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
38.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
92
0.94
0.7
88.3
28.9
Minor 5ss
43.2
-0.7
2.9
55
49.2
Minor BPS
41.2
-0.5
3.6
75.98
41.3

Associated Gene:

Gene:
SCAF8
Ensembl Gene ID:
ENSAPLG00000005765
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047798
52146459 - 52213429
66971