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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52161816_52171580_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52161816 - 52171580
Intron Length:
9765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAAGCAATGACT
Flanking Amino Acid:
MEAVKAFNSECGDVDNLLYS
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
72.1
33.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.2
0.88
0.7
84.7
30.1
Minor 5ss
26.5
-2.7
3.2
33.9
42.2
Minor BPS
45.3
-0.2
1.9
61.62
41.5

Associated Gene:

Gene:
SCAF8
Ensembl Gene ID:
ENSAPLG00000005765
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025247
52161786 - 52213429
51644