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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52171602_52184149_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52171602 - 52184149
Intron Length:
12548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGCTTT
Flanking Amino Acid:
NSECGDVDNLLYSLNDYKPP
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
79.7
35.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
92
0.94
0.7
88.3
28.9
Minor 5ss
41.2
-1
2.9
54.5
43.9
Minor BPS
41.2
-0.5
3.6
75.98
41.3

Associated Gene:

Gene:
SCAF8
Ensembl Gene ID:
ENSAPLG00000005765
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025247
52161786 - 52213429
51644