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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52183377_52184149_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52183377 - 52184149
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTACA
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGCTTT
Flanking Amino Acid:
CHAGLLLAGDLYSLNDYKPP
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
75.4
33.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
92
0.94
0.7
88.3
28.9
Minor 5ss
44.5
-0.6
2.5
56.5
41
Minor BPS
41.2
-0.5
3.6
75.98
41.3

Associated Gene:

Gene:
SCAF8
Ensembl Gene ID:
ENSAPLG00000005765
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006030
52183344 - 52213429
30086