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Intron Name: Anas_platyrhynchos_platyrhynchos_3_52185237_52187194_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52185237 - 52187194

Intron Length:

1958

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTCAG

5'SS Class:

strong_major

3'SS Sequence:

TCATTCTGTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATCAT

U12 Branch Point Sequence:

TTATTTTGAATT

Flanking Amino Acid:

VQSVEKFIQKCKPEYKVPGL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.6

1.03

0.8

77.9

38.6

Major BPS

88.2

0.95

0.9

88.3

28.5

Major PPT

77.4

0.62

0.9

72.9

37.1

Minor 5ss

33.6

-1.9

2.9

40.4

45.7

Minor BPS

67.3

0.62

1.3

81.06

34.6

Associated Gene:

Gene:

SCAF8

Ensembl Gene ID:

ENSAPLG00000005765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047798

52146459 - 52213429

66971

ENSAPLT00000031141

52161786 - 52213429

51644

ENSAPLT00000025247

52161786 - 52213429

51644

ENSAPLT00000006030

52183344 - 52213429

30086