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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52187967_52189587_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52187967 - 52189587
Intron Length:
1621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTAAAATATAT
Flanking Amino Acid:
TTAAMSNNTPGTPVTPVTPA
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
85.9
0.81
0.6
85
22.5
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
38.8
-0.7
2.1
60.48
41.8

Associated Gene:

Gene:
SCAF8
Ensembl Gene ID:
ENSAPLG00000005765
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025247
52161786 - 52213429
51644
ENSAPLT00000006030
52183344 - 52213429
30086
ENSAPLT00000047798
52146459 - 52213429
66971
ENSAPLT00000031141
52161786 - 52213429
51644