Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52189719_52193165_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52189719 - 52193165

Intron Length:

3447

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAATATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTCTTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCAGTTTTAATG

Flanking Amino Acid:

QILQSPQGQQLQQLIQTLQI

Intron Amino Acid Position:

205

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.8

89.3

23.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.9

0.6

89.4

19.2

Minor 5ss

35.6

-1.6

50.6

45.9

Minor BPS

55.3

0.03

1.5

54.64

41.7

Associated Gene:

Gene:

SCAF8

Ensembl Gene ID:

ENSAPLG00000005765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031141

52161786 - 52213429

51644

ENSAPLT00000025247

52161786 - 52213429

51644

ENSAPLT00000006030

52183344 - 52213429

30086

ENSAPLT00000047798

52146459 - 52213429

66971