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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52193343_52199023_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52193343 - 52199023
Intron Length:
5681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCAGTA
5'SS Class:
major
3'SS Sequence:
TGTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
TACTCAGTAACA
Flanking Amino Acid:
PLEQSVSFNKKLMDRFDFGE
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
66.1
40.1
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
83
0.74
0.8
77.1
37.1
Minor 5ss
38.2
-1.3
3.7
55.5
48.7
Minor BPS
52.3
0.07
2.3
69.72
42.3

Associated Gene:

Gene:
SCAF8
Ensembl Gene ID:
ENSAPLG00000005765
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006030
52183344 - 52213429
30086